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Issues
273 Open
299 Closed
144 Open Issues
144 Open issues
75 Closed Issues
219 Open & Closed Issues
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F: Computational neuroscience
F: Data Analysis
F: Neuroimaging
F: Utilities
good first issue
S: Bad licence
S: Future meeting
S: Inactive upstream
S: In review
S: In testing
S: Needs-commit-rights
S: Needs COPR import
S: Needs documentation
S: Needs import
S: Needs legal
S: Needs packaging
S: Needs review
S: Next meeting
S: On hold
S: Requested
S: RPM Fusion
S: Waiting on upstream
S: WIP
T: Blog
T: Community
T: Documentation
T: Outreach and dissemination
T: Software
Milestone unset
F34 Beta freeze 2021-02-23
F30 beta
F30 GA
CNS2019
F31 GA 2019-10-29
Urgent: the Daleks have attacked!
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#285
Do we have the required imagej plugins for neuron tracing?
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Neuroimaging
T: Software
Normal
#288
Package KNOSSOS — 3D Image Annotation
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#289
Package AlexEMG/DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals, including humans
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#295
Package jpgill86/neurotic: Curate, visualize, annotate, and share your behavioral ephys data using Python
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Data Analysis
S: Needs packaging
T: Software
Normal
#319
Package Ermentrout/xppaut: General differential equation solver and bifurcation package
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Computational neuroscience
F: Utilities
S: Needs packaging
T: Software
Normal
#344
Package nengo
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Low
#345
Package Brainrender
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#347
Package python-doit
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Low
#352
Package phy: interactive visualization and manual spike sorting of large-scale ephys data
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#64
Package PyDStool
5
Opened
5 years ago
by
ankursinha
. Modified
4 years ago
F: Computational neuroscience
D: Normal
S: Needs packaging
T: Software
Low
#237
Package vaa3D
Opened
5 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Neuroimaging
T: Software
S: Needs packaging
Normal
#359
Package cellfinder: Automated 3D cell detection and registration of whole-brain images
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
F: Utilities
S: Needs packaging
T: Software
Normal
#360
Package mopet
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#362
Package AllenInstitute/AllenSDK: code for reading and processing Allen Institute for Brain Science data
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#283
scidash/neuronunit: A package for data-driven validation of neuron and ion channel models using SciUnit
1
Opened
4 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#215
Package bmtk: Brain Modeling Toolkit
4
Opened
5 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
T: Software
Normal
#367
Package adamreeve/npTDMS: NumPy based Python module for reading TDMS files produced by LabView
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#58
Package sigviewer
2
Opened
5 years ago
by
ankursinha
. Modified
3 years ago
F: Data Analysis
D: Normal
S: Needs packaging
T: Software
Normal
#373
Package GHFC/HyPyP: The Hyperscanning Python Pipeline
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
good first issue
Normal
#375
Package Bioconductor - bigPint
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#383
Package JASP: Graphical Statistical Software for Common Statistical Designs
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
good first issue
S: Needs packaging
S: Needs documentation
T: Software
Normal
#387
Package BlueBrain/CoreNeuron: Simulator optimized for large scale neural network simulations.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
T: Software
S: Needs packaging
Normal
#101
Package spm12
13
Opened
5 years ago
by
ankursinha
. Modified
3 years ago
S: WIP
D: Normal
F: Data Analysis
S: Needs packaging
T: Software
Normal
#397
Package holoviews: Stop plotting your data - annotate your data and let it visualize itself.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#398
Package NeurodataWithoutBorders/nwb-jupyter-widgets: Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
F: Data Analysis
F: Utilities
good first issue
S: Needs packaging
T: Software
D: Normal
Normal
#407
Package spinalcordtoolbox: software dedicated to the processing and analysis of spinal cord MRI data.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#416
Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#434
Package FlyBrainLab components
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
T: Software
S: Needs packaging
Normal
#437
Package FlyBrainLab/Neuroballad
1
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
F: Utilities
S: Needs packaging
T: Software
Normal
#439
Package BlueBrain/morph-tool: A toolbox for morphology editing. It aims to provide small helper programs that perform simple tasks.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#445
Package bluepysnap
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#448
Package denisecailab/minian: miniscope analysis pipeline with interactive visualizations
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#376
Package brian2tools
3
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
T: Software
S: Needs packaging
F: Computational neuroscience
F: Utilities
F: Data Analysis
D: Normal
Normal
#454
Package facebookresearch/nevergrad: A Python toolbox for performing gradient-free optimization
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#457
Package rgobi
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
T: Software
S: Needs packaging
Normal
#459
Package PBLab/neural_collision_detection: Collide vasculature and neurons for fun and profit
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#450
Package psyneulink: A block modeling system for cognitive neuroscience
3
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#462
Package BlueBrain/NeuroR: A collection of tools to repair morphologies
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#469
Package Klusters/Neuroscope/NDManager: Free Data Visualization and Processing Tools for Neurophysiologists
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
F: Utilities
S: Needs packaging
T: Software
Normal
#378
Package SpikeInterface/spikely: A GUI for running popular spike sorting algorithms on extracellular data of any file format.
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
S: Needs packaging
T: Software
Normal
#476
Package Anipose
1
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
F: Utilities
S: Needs packaging
T: Software
Normal
#475
Package: Whitlock-Group/TRACER: A toolkit to register and visualize anatomical coordinates in the rat brain
1
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
F: Utilities
S: Needs packaging
T: Software
Normal
#477
Package coyote: A visualization tool for reaction networks
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
F: Utilities
S: Needs packaging
Normal
#471
Package dandischema
1
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
D: Easy
good first issue
Normal
#466
Package python-mearec: Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays.
3
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#480
Package AMICI-dev/AMICI: Advanced Multilanguage Interface to CVODES and IDAS
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#481
Package PEtab-dev/libpetab-python: Python package for working with PEtab files
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#484
Package aesara-devs/aesara: Aesara is a Python library that allows one to define, optimize, and efficiently evaluate mathematical expressions involving multi-dimensional arrays.
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#485
Package lmcinnes/umap: Uniform Manifold Approximation and Projection
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#286
Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
1
Opened
4 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Computational neuroscience
S: Needs packaging
T: Software
Normal